PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.158320.1
Common NameCsa_5G636510
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ZF-HD
Protein Properties Length: 308aa    MW: 33292 Da    PI: 8.4213
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.158320.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer106.91.2e-3356112358
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                      v YkeClkNhAa+lG+ha+DGCgEfmps++++ +++++l+CaACgCHRnFHRr++e
  Cucsa.158320.1  56 VVSYKECLKNHAATLGAHALDGCGEFMPSPSATpSDPTSLRCAACGCHRNFHRRDPE 112
                     589*****************************99********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047709.2E-2857111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257748.0E-1757113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.2E-3059110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.43459110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.46E-18186260IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-29187261IPR009057Homeodomain-like
TIGRFAMsTIGR015653.9E-27199256IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MDLAPAPITT SSNNTKSPDP DSDTPTKIPP SFTNGVLKRH HHNHHHHHRP PSSTVVVSYK  60
ECLKNHAATL GAHALDGCGE FMPSPSATPS DPTSLRCAAC GCHRNFHRRD PEDPISTLAI  120
NTAPTHVIEY QPHHRHHPPP PPLAGNRSPN SASPPPISSS YYPSAPHMLL ALSAGLSGRP  180
PENHTQGNNS VPTVSPNTRK RFRTKFSNEQ KEKMLDFAER VGWKMQKRDE DLVRDFCNQV  240
GVERGVLKVW MHNNKNTMGK KPDSNGDATA TAIATVAAAI ATVNNHEDEP DGGLHMHIGS  300
NGSSSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-241982571675ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2001640.0EU200164.1 Cucumis sativus zinc finger-homeodomain protein 1 (ZHD1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011655994.10.0PREDICTED: zinc-finger homeodomain protein 10-like
SwissprotQ9LXG07e-74ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A0A0KSA40.0A0A0A0KSA4_CUCSA; Uncharacterized protein
STRINGVIT_14s0108g00750.t014e-93(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.12e-67homeobox protein 34
Publications ? help Back to Top
  1. Hu W,dePamphilis CW,Ma H
    Phylogenetic analysis of the plant-specific zinc finger-homeobox and mini zinc finger gene families.
    J Integr Plant Biol, 2008. 50(8): p. 1031-45
    [PMID:18713354]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]